o
    RÅ€gF  ã                   @   sD   d Z ddlmZ ddlmZ ddlmZ G dd„ deƒZdd„ Z	d	S )
zParsing AlignACE output files.é    )Ú	Alignment)ÚMotif)ÚSeqc                   @   s   e Zd ZdZdd„ ZdS )ÚRecordz*AlignACE record (subclass of Python list).c                 C   s
   d| _ dS )zInitialize the class.N)Ú
parameters)Úself© r   úG/var/www/html/myenv/lib/python3.10/site-packages/Bio/motifs/alignace.pyÚ__init__   s   
zRecord.__init__N)Ú__name__Ú
__module__Ú__qualname__Ú__doc__r
   r   r   r   r	   r      s    r   c                 C   s°  t ƒ }t| ƒ}| ¡ |_t| ƒ}| ¡ |_d}d}| D ]º}| ¡ }|dkr&q|dd… dkr2i |_q|d dkrF| d¡d }|j |¡ qd	|v r_| d	¡\}}| ¡ }| ¡ }||j|< q|dd
… dkrkg |_q|dd
… dkrˆ| ¡ }|d dksJ ‚t	|d ƒ}g }	q|dd… dkr°d}
t
|	ƒ}t|
|ƒ}t| ¡ d ƒ|_||_||_| |¡ qt| d¡ƒdkrÈt| d¡d ƒ}|	 |¡ qd|v rÒ| d¡}qt|ƒ‚|S )z3Parse an AlignACE format handle as a Record object.NÚ é   ÚParar   ú#ú	é   ú=é   ÚInputr   é   ÚMAPÚACGTéÿÿÿÿÚ*z
)r   ÚnextÚstripÚversionÚcommandr   ÚsplitÚ	sequencesÚappendÚintr   r   ÚfloatÚscoreÚnumberÚmaskÚlenr   Ú
ValueError)ÚhandleÚrecordÚliner(   r'   Úseq_nameÚpar_nameÚ	par_valueÚwordsÚ	instancesÚalphabetÚ	alignmentÚmotifÚseqr   r   r	   Úread   sV   


r7   N)
r   Ú	Bio.Alignr   Ú
Bio.motifsr   ÚBio.Seqr   Úlistr   r7   r   r   r   r	   Ú<module>   s   